6-9 March 2017
UCSD/SDSC
US/Pacific timezone
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Contribution List

Displaying 86 contributions out of 86
Session: Science on OSG
Presented by Prof. Steffen BASS, Dr. Jerome LAURET on 8 Mar 2017 at 12:15 PM
Session: OSG Users
t is well known that exosomes play an important role in cell-to-cell communication by transferring all types of molecules from donor cells to recipient cells. The objective of this study was to assess the microbial mRNA cargos in exosomes of one type of body fluids. To identify the possible microbial species in the samples, we conducted a large-scale metagenomic analysis by using the Open Science ... More
Presented by Jiang SHU on 7 Mar 2017 at 2:50 PM
on 9 Mar 2017 at 11:35 AM
AMS
Presented by Baosong SHAN on 6 Mar 2017 at 2:15 PM
Presented by Kaushik DE on 7 Mar 2017 at 4:50 PM
Presented by Kevin RETZKE on 8 Mar 2017 at 4:00 PM
Session: User Training
Presented by Mats RYNGE on 9 Mar 2017 at 11:50 AM
Presented by Dirk HUFNAGEL on 7 Mar 2017 at 5:10 PM
Presented by Prof. Robert GARDNER on 9 Mar 2017 at 2:00 PM
Presented by Prof. Tom CHEATHAM on 7 Mar 2017 at 10:10 AM
Presented by Roy CHARTIER
Session: Life Sciences
Cancer Computer is a non-profit with a goal to create a computing platform, as a service, for cancer researchers. In just under 2 years since founding, we've received enough donations, to deploy a modest cluster, supporting OSG, the Galaxy Project, researchers in private virtual environments, and scavenging spare CPU and GPU cycles for public projects such as Rosetta and Folding at Home, and the W ... More
Presented by Roy CHARTIER on 8 Mar 2017 at 4:00 PM
Session: User Training
on 9 Mar 2017 at 12:20 PM
Presented by Brian LIN on 7 Mar 2017 at 9:10 AM
Session: OSG Users
Presented by Prof. Fernando LUCO on 7 Mar 2017 at 1:30 PM
DES
Presented by Dr. Kenneth HERNER on 6 Mar 2017 at 11:16 AM
Session: User Training
Presented by Mats RYNGE on 9 Mar 2017 at 11:25 AM
Presented by David SCHULTZ on 6 Mar 2017 at 3:30 PM
Session: State of OSG
Presented by Robert GARDNER
Session: State of OSG
Presented by Prof. Robert GARDNER on 8 Mar 2017 at 9:45 AM
Session: OSG Users
In previous work (Physical Review E 89, 022725 (2014)), a Kauffman-like model for prebiotic evolution was used to explore the effects of requiring that the final steady states generated be out of chemical equilibrium. That constraint, consistent with intuitive ideas of the meaning of 'lifelike', had a significant impact on the probability of the appearance of lifelike states in the model. The m ... More
Presented by Dr. Ben INTOY on 7 Mar 2017 at 2:10 PM
Session: Science on OSG
Presented by Prof. Kam ARNOLD on 8 Mar 2017 at 11:50 AM
Molecular processes are fundamentally stochastic. Randomness is the rule in transcription, translation, cell-to-cell variation in protein levels, and heterogeneity in interactions. One common assumption is that such phenotypic variation is simply noise, and scientists often appeal to the statistics of large numbers when developing deterministic theories, ignoring any potentially adaptive role of ... More
Presented by Dr. Oana CARJA
Session: Life Sciences
Molecular processes are fundamentally stochastic. Randomness is the rule in transcription, translation, cell-to-cell variation in protein levels, and heterogeneity in interactions. One common assumption is that such phenotypic variation is simply noise, and scientists often appeal to the statistics of large numbers when developing deterministic theories, ignoring any potentially adaptive role of ... More
Presented by Dr. Oana CARJA on 8 Mar 2017 at 4:40 PM
Session: Science on OSG
Presented by Annie MALKUS on 8 Mar 2017 at 11:00 AM
Presented by Mrs. Tanya LEVSHINA on 6 Mar 2017 at 3:05 PM
Presented by Dr. Richard JONES on 7 Mar 2017 at 2:30 PM
Presented by Dr. Burt HOLZMAN, Mr. John HOVER on 7 Mar 2017 at 5:30 PM
Presented by Todd MILLER on 8 Mar 2017 at 5:00 PM
Presented by Steve GROOM on 6 Mar 2017 at 11:40 AM
Presented by Eric SEDORE on 7 Mar 2017 at 9:50 AM
Presented by Dr. Kenneth HERNER on 6 Mar 2017 at 11:15 AM
Session: User Training
Presented by Mats RYNGE on 9 Mar 2017 at 9:00 AM
on 9 Mar 2017 at 9:00 AM
JPL
Presented by Bryan BALES on 6 Mar 2017 at 2:45 PM
Session: User Training
Presented by Mr. Suchandra THAPA on 9 Mar 2017 at 9:15 AM
Presented by Jayanti PRASAD on 6 Mar 2017 at 12:00 PM
Session: User Training
Presented by Dr. Bala DESINGHU on 9 Mar 2017 at 10:00 AM
Session: User Training
Presented by Dr. Bala DESINGHU on 9 Mar 2017 at 11:00 AM
Several petabytes of raw DNA sequencing data have been deposited into public databases in recent years, introducing novel opportunities for mining useful biological information. The Open Science Grid (OSG) provides hardware and software infrastructure that have enabled us to address complex biological questions at a larger scale than previously possible with our local HPC resources at Clemson. ... More
Presented by Mr. William POEHLMAN, Prof. Stephen FICKLIN
Session: Life Sciences
Several petabytes of raw DNA sequencing data have been deposited into public databases in recent years, introducing novel opportunities for mining useful biological information. The Open Science Grid (OSG) provides hardware and software infrastructure that have enabled us to address complex biological questions at a larger scale than previously possible with our local HPC resources at Clemson. ... More
Presented by Mr. William POEHLMAN, Prof. Stephen FICKLIN on 8 Mar 2017 at 5:00 PM
Session: OSG Users
Lossy source coding is an efficient data compression technique that aims to minimize the distortion in the reconstructed sequence. Our research involves the investigation of the distortion performance of state-of-the art protograph-based SC-LDGM codes. We show that performance close to Shannon's optimal rate-distortion limits can be achieved with an efficient windowed encoding (WE) algorithm that ... More
Presented by Mr. Ahmad GOLMOHAMMADI on 7 Mar 2017 at 1:50 PM
on 9 Mar 2017 at 12:20 PM
Presented by Mr. Suchandra THAPA, Dr. Derek WEITZEL on 7 Mar 2017 at 9:30 AM
Presented by Kaushik DE on 7 Mar 2017 at 12:00 PM
Session: State of OSG
A look back at the successes of the past year of OSG.
Presented by Rob QUICK on 8 Mar 2017 at 2:00 PM
Session: OSG Users
Presented by Mats RYNGE on 7 Mar 2017 at 3:10 PM
on 9 Mar 2017 at 11:10 AM
on 9 Mar 2017 at 10:20 AM
on 9 Mar 2017 at 9:10 AM
on 9 Mar 2017 at 12:10 PM
on 9 Mar 2017 at 11:50 AM
on 9 Mar 2017 at 10:10 AM
on 9 Mar 2017 at 2:50 PM
on 9 Mar 2017 at 3:00 PM
on 9 Mar 2017 at 11:00 AM
on 9 Mar 2017 at 12:00 PM
SPT
Presented by Dr. Benedikt RIEDEL on 6 Mar 2017 at 1:45 PM
Presented by Mustafa MUSTAFA on 7 Mar 2017 at 2:00 PM
on 9 Mar 2017 at 2:30 PM
Presented by Marina KRENZ on 7 Mar 2017 at 4:40 PM
Presented by Dr. Derek WEITZEL on 9 Mar 2017 at 11:45 AM
Presented by Dr. Brian BOCKELMAN on 7 Mar 2017 at 4:30 PM
Presented by Dr. Derek WEITZEL on 8 Mar 2017 at 4:20 PM
Presented by Brian LIN on 9 Mar 2017 at 11:00 AM
Session: State of OSG
Presented by Prof. Frank WUERTHWEIN on 8 Mar 2017 at 9:05 AM
Session: State of OSG
Presented by David SWANSON on 8 Mar 2017 at 9:30 AM
Session: State of OSG
Presented by Dr. Shawn MCKEE on 8 Mar 2017 at 3:00 PM
Session: State of OSG
Presented by Susan SONS on 8 Mar 2017 at 3:15 PM
Session: State of OSG
Presented by Dr. Brian BOCKELMAN on 8 Mar 2017 at 2:30 PM
TBD
on 9 Mar 2017 at 3:10 PM
Presented by Mr. Edgar FAJARDO HERNANDEZ on 7 Mar 2017 at 11:40 AM
Session: OSG Users
https://docs.google.com/presentation/d/1s5n-ObLv5In3lVpqUJoUqO7RZDEMf5WjXzYmJJGdraA/edit?usp=sharing As data collection systems are augmented, more individual labs require high-throughput computing in order to process all of their data. In these labs, researchers are continuously developing their own analytics methods in scripting languages. These facts are especially true in the neuroscience com ... More
Presented by Mr. Scott COLE on 7 Mar 2017 at 2:30 PM
Presented by Prof. Nepomuk OTTE on 7 Mar 2017 at 1:30 PM
Session: State of OSG
Presented by Dr. Michael NORMAN on 8 Mar 2017 at 9:00 AM
Presented by Dr. Benedikt RIEDEL on 7 Mar 2017 at 2:50 PM
Presented by Prof. Dana BRUNSON on 7 Mar 2017 at 11:00 AM
Presented by Prof. Frank WUERTHWEIN on 9 Mar 2017 at 9:20 AM
Presented by Mr. Suchandra THAPA
Session: Life Sciences
FreeSurfer is a software suite for processing and analyzing human MRI images. Freesurfer takes several hours to process a typical MRI scan (~40MB in size) and generates about 300MB of results. This makes it a good fit for computation on OSG. We present FSurf, a computational service that allows users to easily run typical FreeSurfer workflows on OSG.
Presented by Mr. Suchandra THAPA on 8 Mar 2017 at 4:20 PM