6-9 March 2017
UCSD/SDSC
US/Pacific timezone
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Life Sciences

Place

Location: UCSD/SDSC
Date: 7 Mar 16:00 - 5:30 PM

Conveners

  • (Remote:https://IU.zoom.us/j/376841850)
    • Quick, Rob (Indiana University)

Timetable | Contribution List

Displaying 4 contributions out of 4
Session: Life Sciences
Cancer Computer is a non-profit with a goal to create a computing platform, as a service, for cancer researchers. In just under 2 years since founding, we've received enough donations, to deploy a modest cluster, supporting OSG, the Galaxy Project, researchers in private virtual environments, and scavenging spare CPU and GPU cycles for public projects such as Rosetta and Folding at Home, and the W ... More
Presented by Roy CHARTIER on 8/3/2017 at 0:00
Session: Life Sciences
Molecular processes are fundamentally stochastic. Randomness is the rule in transcription, translation, cell-to-cell variation in protein levels, and heterogeneity in interactions. One common assumption is that such phenotypic variation is simply noise, and scientists often appeal to the statistics of large numbers when developing deterministic theories, ignoring any potentially adaptive role of ... More
Presented by Dr. Oana CARJA on 8/3/2017 at 0:40
Session: Life Sciences
Several petabytes of raw DNA sequencing data have been deposited into public databases in recent years, introducing novel opportunities for mining useful biological information. The Open Science Grid (OSG) provides hardware and software infrastructure that have enabled us to address complex biological questions at a larger scale than previously possible with our local HPC resources at Clemson. ... More
Presented by Mr. William POEHLMAN, Prof. Stephen FICKLIN on 8/3/2017 at 1:00
Session: Life Sciences
FreeSurfer is a software suite for processing and analyzing human MRI images. Freesurfer takes several hours to process a typical MRI scan (~40MB in size) and generates about 300MB of results. This makes it a good fit for computation on OSG. We present FSurf, a computational service that allows users to easily run typical FreeSurfer workflows on OSG.
Presented by Mr. Suchandra THAPA on 8/3/2017 at 0:20
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